Manual Data Processing
JSBG software - CVMFS
PXSOFT has been replaced with CVMFS. The main difference is that you must load the module(s) associated with the program(s) that you want to use.
As of April 2026, these modules are available (we recommend using visa.esrf.fr for manual processing):
- abcfold/1.2.0
- AreTomo3/2.1.0
- autodock-vina/v1.2.7
- autodock/1.0.0
- autogrid/v4.2.9
- autoPROC/20250717
- bsoft/2.1.3
- buster/20250717
- ccCluster/1.0
- ccp4/9.0.015
- cctbx/2025.8
- chimera/1.16
- chimerax/1.5
- cryodrgn/1.1.0
- cryoEF/1.1.0
- crystfel/0.12.0
- dectris-neggia/1.2.0
- deepEMhancer/20221117
- dynamo/1.1.532
- eman2/2.99
- emClarity/1.6.1.0
- ewoksid29/1.4.0
- findmysequence/1.0.8
- flux2dose/4.1.0
- gctf/1.18
- generate_XDS.INP/1.19
- gle/4.3.6
- gnuplot/5.4.10
- gphl-workflows/20260306
- grenades/
- hkl2map/0.4.c-beta
- icos/20260112
- imod/4.12.30
- meeko/v0.6.1
- modelangelo/0.2.2
- MotionCor3/1.0.1
- mrfana/20230131
- mxnice/4.0
- mxworkflows/test
- pdb_redo/7.38
- plotmtv/1.4.1
- rabdam/2.0
- rdfit/2.1.1
- recen/1.1.6beta
- relion/5.0.0_cuda-11.7.1
- rfdiffusion2/20260126
- scipion/stable_20250520
- scrubber/0.1.1
- solve/2.13
- ssx_proc/20250523
- stac2/20130830
- topaz/0.3.17
- transcal/1.1.6beta
- uMol/June2024
- usf/20050316
- wkhtmltopdf/0.12.5
- XChemExplorer/1.9.4
- xds-zcbf/20230608
- xdsapp/3.2.0
- xdsinp2/1.0
- xdsme/0.6.6.0
- xgandalf/1.0
- Xtrapol8/1.2.5
- xvfb/20230502
- Data processing
- MOSFLM
- XDS
- Denzo/Scalepack
- PROW: Integration of spatially overlapped and/or weak patterns
- autoPROC
Structure solution and refinement
Graphics packages
-
PyMol
-
Coot
-
Chimera
Responsible: Olof Svensson (ESRF)



